Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0257-v2Release info

Latest

Research title

Development of culturing methods amplifying micro-specimens derived from human pancreas and biliary tract tissues

Research overview

Aims
Comprehensive analysis of human pancreatic tumor subtypes.
Methods
Whole Exome sequencing, RNA sequencing, ATAC sequencing, ChIP sequencing, and Hi-C analysis using organoids established from pancreatic tumors.
Participants/materials
Pancreatic ductal adenocarcinoma, Intraductal papillary mucinous neoplasm
URL
N/A

Datasets

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000366NGS (Exome, RNA-seq)
  • WES
  • RNA-seq
Controlled-access (Type I)2021-12-27
JGAD000633NGS (RNA-seq, ChIP-seq, Hi-C)
  • RNA-seq
  • ChIP-seq
  • Hi-C
Controlled-access (Type I)2023-01-05
E-GEAD-414NGS (RNA-seq)
  • RNA-seq
Unrestricted-access2021-12-27
JGAD000367NGS (ATAC-seq, ChIP-seq)
  • ATAC-seq
  • ChIP-seq
Controlled-access (Type I)2021-12-24
E-GEAD-416NGS (ATAC-seq)
  • ATAC-seq
Unrestricted-access2021-12-27
E-GEAD-417NGS (ChIP-seq)
  • ChIP-seq
Unrestricted-access2021-12-27
JGAD000365NGS (Hi-C)
  • Hi-C
Controlled-access (Type I)2021-12-24
E-GEAD-415NGS (Hi-C)
  • Hi-C
Unrestricted-access2021-12-27

Data provider

Principal investigator
Keisuke Tateishi
Affiliation
Department of Gastroenterology, The University of Tokyo

Research projects

No research projects.

Grants

NameTitleProject number
KAKENHI Grant-in-Aid for Scientific Research (C)
Comprehensive biological network analysis of pancreatic cancer
  • 19K08435
KAKENHI Grant-in-Aid for Scientific Research (C)
Stratification and optimization of pancreatic cancer treatment based on chromatin dynamics
  • 21K15966

Related publications

TitleDOIDataset ID
MNX1-HNF1B axis is indispensable for intraductal papillary mucinous neoplasm lineages
https://doi.org/10.1053/j.gastro.2021.12.254 (opens in a new tab)
HNF1B-driven three-dimensional chromatin structure for molecular classification in pancreatic cancers
https://doi.org/10.1111/cas.15690 (opens in a new tab)

Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Michiaki HamadaHamada Laboratory, Faculty of Science and Engineering, Waseda UniversityJapanConstruction of RNA-targeted Drug Discovery Database2023-01-05 – 2027-10-31
Takuya YamamotoCenter for Intractable Diseases and ImmunoGenomics, National Institutes of Biomedical Innovation, Health and NutritionJapanBasic research for vaccine development against gastrointestinal cancer and malignant melanoma based on the identification of novel cancer antigens 2024-11-12 – 2026-03-31