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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000366

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
198 GB
File formats
  • FASTQ
  • VCF
  • TXT
Research
hum0257
Date published
2021-12-27
Date modified
2022-12-28
DDBJ Search
JGAD000366 (opens in a new tab)
JGA Study
JGAS000263 (opens in a new tab)

Analysis method

WES

Materials and participants
Pancreatic ductal adenocarcinoma (ICD10: C25.3): 10 cases
- organoids derived from tumor tissues: 10 samples
Intraductal papillary mucinous neoplasm (ICD10: D13.6): 3 cases
- organoids derived from tumor tissues: 3 samples
  • Health status
    Affected
  • Subject count
    13 (Individual)
Disease
Pancreatic ductal adenocarcinoma (C253)
Intraductal papillary mucinous neoplasm (D136)
Sample description
DNAs extracted from organoids established from pancreatic tumors
  • Tissue
    Organoid
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V6
Fragmentation
Ultrasonic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
100 bp
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
Pancreatic ductal adenocarcinoma (ICD10: C25.3): 10 cases
[JGAD000366/E-GEAD-414] organoids derived from tumor tissues: 22 samples
Intraductal papillary mucinous neoplasm (ICD10: D13.6): 5 cases
[JGAD000366/E-GEAD-414] organoids derived from tumor tissues: 4 samples, organoids derived from tumor-adjacent tissues: 1 sample
  • Health status
    Affected
  • Subject count
    15 (Individual)
Disease
Pancreatic ductal adenocarcinoma (C253)
Intraductal papillary mucinous neoplasm (D136)
Sample description
RNAs extracted from organoids established from pancreatic tumors
  • Tissue
    Organoid
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq RNA Library Prep Kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
Heat treatment
Platform
Illumina HiSeq 2500
Illumina NovaSeq 6000
Read type
Paired-end
Read length
100 bp
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)