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NBDC Human Database

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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0366-v1Release info

Latest

Research title

Pathogenesis of severe acute respiratory syndrome coronavirus 2 infection (COVID-19)

Research overview

Aims
To analyze the immune response to the mRNA vaccine against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and pathophysiology of the coronavirus disease 2019 (COVID-19) and to provide insights into the clinical development.
Methods
single cell RNA-seq: Peripheral blood mononuclear cells from COVID-19 patients (with ARDS, n=8; without ARDS, n=8) and healthy controls (n=5) were analyzed by single cell RNA sequence.
RNA-seq: Total RNA extracted from monocytes derived from peripheral blood mononuclear cells of healthy subjects (n=4) was analyzed by RNA sequence.
ATAC-seq: DNA extracted from monocytes derived from peripheral blood mononuclear cells of healthy subjects (n=5) was analyzed by ATAC sequence.
Participants/materials
single cell RNA-seq: patients with COVID-19 (with ARDS, n=8; without ADRS, n=8), healthy subjects (n=5)
RNA-seq: healthy subjects (n=4 per person, PBMC)
ATAC-seq: healthy subjects (n=4 or 5 per person, PBMC)
URL
N/A

Datasets

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
E-GEAD-551NGS (scRNA-seq)
  • scRNA-seq
Unrestricted-access2023-03-20
E-GEAD-552NGS (RNA-seq)
NGS (ATAC-seq)
  • RNA-seq
  • ATAC-seq
Unrestricted-access2023-03-20

Data provider

Principal investigator
Yasuhiro Kato
Affiliation
Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University

Research projects

No research projects.

Grants

NameTitleProject number
KAKENHI Grant-in-Aid for Scientific Research (S)
Pathological significance and regulation of guidance factors in neurology, immunity and metabolism.
  • 18H05282

Related publications

TitleDOIDataset ID
Consecutive BNT162b2 mRNA vaccination induces short-term epigenetic memory in innate immune cells