Research ID
hum0366-v1Release info
Research title
Pathogenesis of severe acute respiratory syndrome coronavirus 2 infection (COVID-19)
Research overview
- Aims
- To analyze the immune response to the mRNA vaccine against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and pathophysiology of the coronavirus disease 2019 (COVID-19) and to provide insights into the clinical development.
- Methods
- single cell RNA-seq: Peripheral blood mononuclear cells from COVID-19 patients (with ARDS, n=8; without ARDS, n=8) and healthy controls (n=5) were analyzed by single cell RNA sequence.
RNA-seq: Total RNA extracted from monocytes derived from peripheral blood mononuclear cells of healthy subjects (n=4) was analyzed by RNA sequence.
ATAC-seq: DNA extracted from monocytes derived from peripheral blood mononuclear cells of healthy subjects (n=5) was analyzed by ATAC sequence. - Participants/materials
- single cell RNA-seq: patients with COVID-19 (with ARDS, n=8; without ADRS, n=8), healthy subjects (n=5)
RNA-seq: healthy subjects (n=4 per person, PBMC)
ATAC-seq: healthy subjects (n=4 or 5 per person, PBMC) - URL
- N/A
Datasets
| Cart | Dataset ID | Type of data | Analysis method | Access criteria | Date published |
|---|---|---|---|---|---|
| E-GEAD-551 | NGS (scRNA-seq) |
| Unrestricted-access | 2023-03-20 | |
| E-GEAD-552 | NGS (RNA-seq) NGS (ATAC-seq) |
| Unrestricted-access | 2023-03-20 |
Data provider
- Principal investigator
- Yasuhiro Kato
- Affiliation
- Department of Respiratory Medicine and Clinical Immunology, Graduate School of Medicine, Osaka University
Research projects
No research projects.
Grants
| Name | Title | Project number |
|---|---|---|
KAKENHI Grant-in-Aid for Scientific Research (S) | Pathological significance and regulation of guidance factors in neurology, immunity and metabolism. |
|
Related publications
| Title | DOI | Dataset ID |
|---|---|---|
Consecutive BNT162b2 mRNA vaccination induces short-term epigenetic memory in innate immune cells |