Research ID

hum0182-v1Release info

This page is a past version (v1). The latest version is v5.

Research title

Comprehansive analysis of somatic mutations and genetic variations with whole genome sequencing

Aims: Indetification of stractural variations by using of long read whole genome sequencing data
Methods: Whole genome sequencing with Nanopore sequencer
Participants/materials: DNA samples from 2 Japanese individuals.
1) DNA extracted from normal blood cell of a liver cancer patient (ICGC: RK067 [hum0158])
2) HapMap sample (NA18943)
URL: N/A

The list is the one this version published; each dataset's content is shown as it is now.

Cart	Dataset ID	Type of data	Platforms	Access criteria	Date published
	JGAD000261	NGS (WGS): RK067	Illumina Genome Analyzer IIx Illumina HiSeq 2000 Oxford Nanopore Technologies MinION	Controlled-access (Type I)	2020-10-21
	DRA008482	NGS (WGS): NA18943	Oxford Nanopore Technologies MinION	Unrestricted-access	2019-06-21

Principal investigator: Akihiro Fujimoto
Affiliation: Department of Drug Discovery Medicine, Graduate School of Medicine, Kyoto University

Name	URL
Japan Agency for Medical Research and Development (AMED)	N/A

Name	Title	Project number
Platform Program for Promotion of Genome Medicine, Japan Agency for Medical Research and Development (AMED)	Development of advanced data analysis methods for genome sequencing	JP18km0405207

No related publications.

Principal investigator	Affiliation	Country/Region	Research title	Period of data use	Dataset ID
Shuaicheng Li		Hong Kong	A new method to construct the haplotypes of viral integration regions based on multiple sequencing data.	2021-12-13 – 2023-01-05	JGAD000261
zeng tianfu	Laboratory of Omics Technology and Bioinformatics, Sichuan University	China	Study on Heterogeneity of Hepatocellular Carcinoma Based on Nanopore Sequencing Technology	2023-10-30 – 2024-09-18	JGAD000635