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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

DRA008482

Type of data
NGS (WGS): NA18943
Access criteria
Unrestricted-access
Total data volume
68.2 GB
File formats
  • FASTQ
Research
hum0182
Date published
2019-06-21
Date modified
2019-05-31

Analysis method

WGS

Materials and participants
1) RK067 (a liver cancer patient): 1 case
2) NA18943 (HapMap): 1 sample
4) RK014, RK019, RK020, RK067, RK085, RK0143, RK147, RK156, RK157, RK167, RK281 (liver cancer patients): 11 cases
  • Health status
    Mixed
  • Cohort
    HapMap
  • Population
    Japanese
Sample description
1) DNA extracted from blood sample (normal cell) of a liver cancer patient
2) HapMap DNA sample
4) RK014, RK019, RK020, RK085, RK0143, RK147, RK156, RK157, RK167, RK281: DNA extracted from blood samples (normal cell) of liver cancer patients
RK014, RK019, RK020, RK067, RK085, RK0143, RK147, RK156, RK157, RK167, RK281: DNA extracted from tumor tissues of liver cancer patients
  • Tissue
    Peripheral blood
  • Tumor / normal
    Mixed
Cell line
NA18943
Experimental method
WGS
Target
N/A
Reagent kit
Ligation Sequencing Kit (SQK-LSK108)
Fragmentation
g-TUBE (Covaris)
Platform
Oxford Nanopore Technologies MinION
Read type
Single-end
Read length
7463 bp (①④)
3479 bp (②)