Dataset ID
DRA008482
- Type of data
- NGS (WGS): NA18943
- Access criteria
- Unrestricted-access
- Total data volume
- 68.2 GB
- File formats
- FASTQ
- Research
- hum0182
- Date published
- 2019-06-21
- Date modified
- 2019-05-31
- DDBJ Search
- DRA008482 (opens in a new tab)
Analysis method
WGS
- Materials and participants
- 1) RK067 (a liver cancer patient): 1 case
2) NA18943 (HapMap): 1 sample
4) RK014, RK019, RK020, RK067, RK085, RK0143, RK147, RK156, RK157, RK167, RK281 (liver cancer patients): 11 cases - Health statusMixed
- CohortHapMap
- PopulationJapanese
- Sample description
- 1) DNA extracted from blood sample (normal cell) of a liver cancer patient
2) HapMap DNA sample
4) RK014, RK019, RK020, RK085, RK0143, RK147, RK156, RK157, RK167, RK281: DNA extracted from blood samples (normal cell) of liver cancer patients
RK014, RK019, RK020, RK067, RK085, RK0143, RK147, RK156, RK157, RK167, RK281: DNA extracted from tumor tissues of liver cancer patients - TissuePeripheral blood
- Tumor / normalMixed
- Cell line
- NA18943
- Experimental method
- WGS
- Target
- N/A
- Reagent kit
- Ligation Sequencing Kit (SQK-LSK108)
- Fragmentation
- g-TUBE (Covaris)
- Platform
- Oxford Nanopore Technologies MinION
- Read type
- Single-end
- Read length
- 7463 bp (①④)
3479 bp (②) - Data use policy
- NBDC data sharing policy (JGAP000001)