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NBDC Human Database

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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0177-v1Release info

Latest

Research title

Genetic analysis assciated with malignance of brain tumor

Research overview

Aims
DNA methylome analyses and expression analysis for malignant glioma harbouring H3F3A gene mutation
Methods
PBAT-seq, RNA-seq and ChIP-seq
Participants/materials
14 Malignant glioma patients and 1 cell line
URL
N/A

Datasets

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000280NGS (PBAT-seq, RNA-seq, ChIP-seq)
  • PBAT-seq
Controlled-access (Type I)2020-09-28
JGAD000281NGS (PBAT-seq, RNA-seq, ChIP-seq)
  • RNA-seq
Controlled-access (Type I)2020-09-28
JGAD000282NGS (PBAT-seq, RNA-seq, ChIP-seq)
  • ChIP-seq
Controlled-access (Type I)2020-09-28

Data provider

Principal investigator
Takashi Ito
Affiliation
Department of Medical Biochemistry, Graduate School of Medical Sciences, Kyushu University

Research projects

No research projects.

Grants

NameTitleProject number
Platform Project for Supporting Drug Discovery and Life Science Research, Japan Agency for Medical Research and Development (AMED)
Improvements and support in methylome analysis
  • JP16am0101059
Platform Project for Supporting Drug Discovery and Life Science Research, Japan Agency for Medical Research and Development (AMED)
Advanced methylomics: support and development
  • JP19am0101103
KAKENHI Grant-in-Aid for Scientific Research on Priority Areas (Research in a proposed research area)
Development and applications of next generation epigenome analysis technologies
  • 17H06305

Related publications

TitleDOIDataset ID
Highly efficient single-stranded DNA ligation technique improves low-input whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
https://doi.org/10.1093/nar/gkz435 (opens in a new tab)
N/A

Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Michiaki HamadaHamada Laboratory, Faculty of Science and Engineering, Waseda UniversityJapanConstruction of RNA-targeted Drug Discovery Database2023-01-05 – 2027-10-31