Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000280

Type of data
NGS (PBAT-seq, RNA-seq, ChIP-seq)
Access criteria
Controlled-access (Type I)
Total data volume
1.7 TB
File formats
  • FASTQ
Research
hum0177
Date published
2020-09-28
Date modified
2020-09-28
DDBJ Search
JGAD000280 (opens in a new tab)
JGA Study
JGAS000197 (opens in a new tab)

Analysis method

PBAT-seq

Materials and participants
Malignant glioma (ICD10: C71.9): 14 cases + 1 cell line
  • Health status
    Affected
  • Subject count
    15 (Mixed)
Disease
  • Malignant glioma
Sample description
DNAs extracted from tumor tissues of malignant glioma and a cell line
  • Tumor / normal
    Tumor
Cell line
IFO50356
Sample provider
IFO50356 (JCRB)
Experimental method
PBAT-seq
Target
N/A
Reagent kit
TACS ligation-mediated PBAT
Fragmentation
Ultrasonic fragmentation (Covaris S220)
Platform
Illumina HiSeq X
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)