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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0174-v5Release info

This page is a past version (v5). The latest version is v6.
Latest version (v6)

Research title

Building a Database of Genomic Structural Variants in Japanese population

Research overview

Aims
To build a database of genomic structural variants in Japanese population
Methods
We sequenced genomic DNAs using PacBio, 10X Genomics and Nanopore sequencing technologies, and analyzed genomic structural variations.
Participants/materials
Japanese (collected by Japanese B cell DNA bank)
URL
N/A

Datasets

The list is the one this version published; each dataset's content is shown as it is now.

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000251NGS (WGS): Sequence raw data, Structural Variants data for each sample
  • WGS
Controlled-access (Type I)2020-10-07
JGAD000706NGS (WGS)
  • WGS
Controlled-access (Type I)2023-06-30
JGAD000392NGS (WGS): Sequence raw data, Structural Variants data for each sample
  • WGS
Controlled-access (Type I)2023-09-26
JGAD000622NGS (WGS): Sequence raw data, haplotype data for each sample
  • WGS
Controlled-access (Type I)2023-08-10

Data provider

Principal investigator
Shinichi Morishita
Affiliation
Graduate School of Frontier Sciences, the University of Tokyo

Research projects

No research projects.

Grants

NameTitleProject number
Advanced Genome Research and Bioinformatics Study to Facilitate Medical Innovation, Platform Program for Promotion of Genome Medicine, Japan Agency for Medical Research and Development (AMED)
Informatics for analyzing de novo human genome assemblies
  • JP16km0405204
Biobank - Construction and Utilization biobank for genomic medicine REalization, Japan Agency for Medical Research and Development (AMED)
Informatics for analyzing de novo human genome assemblies
  • JP21tm0424219

Related publications

TitleDOIDataset ID
Rapid and ongoing evolution of repetitive sequence structures in human centromeres.
https://doi.org/10.1126/sciadv.abd9230 (opens in a new tab)
JTK: targeted diploid genome assembler
https://doi.org/10.1093/bioinformatics/btad398 (opens in a new tab)
A landscape of complex tandem repeats within individual human genomes
https://doi.org/10.1038/s41467-023-41262-1 (opens in a new tab)

Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Yuta KochiDepartment of Genomic Function and Diversity, Medical Research Institute, Tokyo Medical and Dental UniversityJapanGenetic study of complex diseases through comprehensive analysis of functional genetic variations2023-04-12 – 2028-03-31
Yukinori OkadaDepartment of Statistical Genetics, Graduate School of Medicine, Osaka UniversityJapanElucidation of disease etiology by trans-layer omics analysis2024-03-05 – 2029-03-31