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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000706

Type of data
NGS (WGS)
Access criteria
Controlled-access (Type I)
Total data volume
1.4 GB
File formats
  • BAM
Research
hum0174
Date published
2023-06-30
Date modified
2023-06-30
DDBJ Search
JGAD000706 (opens in a new tab)
JGA Study
JGAS000580 (opens in a new tab)

Analysis method

WGS

Materials and participants
Purified DNA from Japanese-origin B cell liens: 1 samples
  • Subject count
    1 (Sample)
  • Population
    Japanese
Sample description
Purified DNA from Japanese-origin B cell lines
  • Tissue
    B cell
  • Tumor / normal
    Normal
Cell line
Japanese B cell line
Sample provider
the Health Science Research Resources Bank (HSRRB), the National Institutes of Biomedical Innovation, Health and Nutrition (NIBIOHN)
Experimental method
WGS
Target
MHC, LRC, Chr1, SMN1/SMN2
Reagent kit
Ultra-Long DNA Sequencing Kit (SQK-ULK001)
Fragmentation
Transposase-based
Platform
Oxford Nanopore Technologies PromethION
Read type
Single-end
Read length
56.2–63.8 kbp (N50)
Reference genome
T2T-CHM13
Mapping
minimap2 (v2.24) with "-x map-ont"
Mapping quality
N/A
Coverage (depth)
81–104x (Range of medians)
Data use policy
NBDC data sharing policy (JGAP000001)