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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000622

Type of data
NGS (WGS): Sequence raw data, haplotype data for each sample
Access criteria
Controlled-access (Type I)
Total data volume
7.5 TB
File formats
  • FASTQ
  • FASTA
  • BAM
  • VCF
Research
hum0174
Date published
2023-08-10
Date modified
2025-04-09
DDBJ Search
JGAD000622 (opens in a new tab)
JGA Study
JGAS000505 (opens in a new tab)

Analysis method

WGS

Materials and participants
Purified DNA from Japanese-origin B cell lines: 177 + 30 samples
177 samples
  • Subject count
    177 (Sample)
  • Population
    Japanese
Sample description
Purified DNA from Japanese-origin B cell lines
  • Tumor / normal
    Normal
Cell line
Japanese B cell line
Sample provider
the Health Science Research Resources Bank (HSRRB), the National Institutes of Biomedical Innovation, Health and Nutrition (NIBIOHN)
Experimental method
WGS
Target
N/A
Reagent kit
SMRTbell Library Prep Kit
Fragmentation
Megaruptor
Platform
PacBio Sequel II
Read type
Single-end
Read length
14,949 bp
Reference genome
GRCh38
Mapping
minimap2 (hg38-no_alt)
QC and filtering
Qubit, NanoDrop, TapeStation, Femto Pulse, Pulsed-field gel electrophoresis
Analysis method
DeepVariant
Coverage (depth)
CCS: 9.06x
Data use policy
NBDC data sharing policy (JGAP000001)