Research ID
hum0099-v1Release info
Research title
Expression quantitative trait loci analysis using human immune cells
Research overview
- Aims
- Expression quantitative trait loci analysis using human immune cells
- Methods
- Total RNA from whole blood cells and five immune cell populations (CD4⁺ T cells, CD8⁺ T cells, B cells, NK cells, and monocytes) and genomic DNA isolated from whole blood cells were used for RNA-seq and genotyping, respectively.
- Participants/materials
- 105 Japanese healthy volunteers
- URL
- N/A
Datasets
| Cart | Dataset ID | Type of data | Analysis method | Access criteria | Date published |
|---|---|---|---|---|---|
| JGAD000085 | RNA-seq (Fragments Per Kilobase of exon per Million mapped fragments: FPKM) |
| Controlled-access (Type I) | 2020-09-28 | |
| NHA000051 | eQTL (Summary of stats for each variant [ex. effect size, P-value]) |
| Unrestricted-access | 2017-04-24 |
Data provider
- Principal investigator
- Kazuhiko Yamamoto
- Affiliation
- The University of Tokyo, Graduate School of Medicine, Allergy and Rheumatology
- Principal investigator
- Michiaki Kubo
- Affiliation
- RIKEN Center for Integrative Medical Science
Research projects
No research projects.
Grants
| Name | Title | Project number |
|---|---|---|
Collaboration with Takeda Pharmaceutical Company Limited. | Identification of treatment targets based on eQTL | N/A |
Related publications
| Title | DOI | Dataset ID |
|---|---|---|
Polygenic burdens on cell-specific pathways underlie the risk of rheumatoid arthritis |
Controlled access users
| Principal investigator | Affiliation | Country/Region | Research title | Period of data use | Dataset ID |
|---|---|---|---|---|---|
| Kyuyoung Song | Biochemistry and Molecular Biology, University of Ulsan college of medicine | South Korea | Analysis of genome-wide association screening data for the identification of genes associated with inflammatory bowel disease in Koreans | 2018-08-06 – 2019-09-24 | |
| Michiaki Hamada | Hamada Laboratory, Faculty of Science and Engineering, Waseda University | Japan | Construction of RNA-targeted Drug Discovery Database | 2023-01-05 – 2027-10-31 | |
| Yuta Kochi | Department of Genomic Function and Diversity, Medical Research Institute, Tokyo Medical and Dental University | Japan | Genetic study of complex diseases through comprehensive analysis of functional genetic variations | 2023-04-12 – 2028-03-31 |