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Dataset ID

NHA000070

Type of data
GWAS for 58 quantitative traits
Access criteria
Unrestricted-access
Total data volume
7.3 GB
File formats
  • MAP
  • HTML
  • ZIP
Research
hum0014
Date published
2018-05-01
Date modified
2018-05-01
Secondary ID
hum0014.v8.58qt.v1

Unrestricted-access files linked to this dataset

Download the URL list
Per page
20
2050100

41–59 / 59

FileLabelSizeCopy URL
hum0014.v8.Neutro.zipHematological: Neutrophil count126 MB
hum0014.v8.P.zipElectrolyte: Phosphorus126 MB
hum0014.v8.PP.zipBlood pressure: Pulse pressure127 MB
hum0014.v8.PT.zipOther biochemical: Prothrombin time126 MB
hum0014.v8.PW.zipEchocardiographic: Posterior wall thickness123 MB
hum0014.v8.Plt.zipHematological: Platelet count127 MB
hum0014.v8.RBC.zipHematological: Red blood cell count127 MB
hum0014.v8.RWT.zipEchocardiographic: Relative wall thickness123 MB
hum0014.v8.SBP.zipBlood pressure: Systolic blood pressure127 MB
hum0014.v8.TBil.zipLiver-related: Total bilirubin127 MB
hum0014.v8.TC.zipMetabolic: Total cholesterol127 MB
hum0014.v8.TG.zipMetabolic: Triglyceride127 MB
hum0014.v8.TP.zipProtein: Total protein127 MB
hum0014.v8.UA.zipKidney-related: Uric acid127 MB
hum0014.v8.WBC.zipHematological: White blood cell count127 MB
hum0014.v8.ZTT.zipLiver-related: Zinc sulfate turbidity test124 MB
hum0014.v8.eGFR.zipKidney-related: Estimated glomerular filtration rate127 MB
hum0014.v8.sCr.zipKidney-related: Serum creatinine127 MB
hum0014_README_QTL_GWAS.htmlDictionary file36.0 KB

41–59 / 59

Analysis method

Genotyping by array

Materials and participants
162,255 individuals for 58 quantitative traits
Sample description
DNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Platform
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
Genotyping QC: sample call rate < 0.98, SNV call rate < 0.99, HWE P < 1 x 10^-6
QC for reference panel:
After excluding 11 closely related individuals, variants with HWE P < 1.0 x 10^-6, MAF < 0.01 were excluded.
QC after imputation:
Variants with imputation quality of Rsq < 0.7 were excluded.
Imputation
minimac [imputation (1000 genomes Phase I v3)]
Analysis method
GenCall software (GenomeStudio)
Variant count
Autosomes: 5,961,600 SNVs
X chromosome: 147,353 SNVs
Data use policy
NBDC data sharing policy (JGAP000001)