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Dataset ID

NHA000070

Type of data
GWAS for 58 quantitative traits
Access criteria
Unrestricted-access
Total data volume
7.3 GB
File formats
  • MAP
  • HTML
  • ZIP
Research
hum0014
Date published
2018-05-01
Date modified
2018-05-01
Secondary ID
hum0014.v8.58qt.v1

Unrestricted-access files linked to this dataset

Download the URL list
Per page
20
2050100

1–20 / 59

FileLabelSizeCopy URL
hum0014.v8.AG.zipProtein: Albumin/globulin ratio126 MB
hum0014.v8.ALP.zipLiver-related: Alkaline phosphatase127 MB
hum0014.v8.ALT.zipLiver-related: Alanine aminotransferase127 MB
hum0014.v8.APTT.zipOther biochemical: Activated partial thromboplastin time126 MB
hum0014.v8.AST.zipLiver-related: Aspartate aminotransferase127 MB
hum0014.v8.Alb.zipProtein: Albumin127 MB
hum0014.v8.BS.zipMetabolic: Blood sugar126 MB
hum0014.v8.BUN.zipKidney-related: Blood urea nitrogen127 MB
hum0014.v8.Baso.zipHematological: Basophil count126 MB
hum0014.v8.CK.zipOther biochemical: Creatine kinase127 MB
hum0014.v8.CRP.zipOther biochemical: C-reactive protein126 MB
hum0014.v8.Ca.zipElectrolyte: Calcium126 MB
hum0014.v8.Cl.zipElectrolyte: Chlorine127 MB
hum0014.v8.DBP.zipBlood pressure: Diastolic blood pressure127 MB
hum0014.v8.EA.zipEchocardiographic: E/A ratio124 MB
hum0014.v8.EF.zipEchocardiographic: Ejection fraction124 MB
hum0014.v8.Eosino.zipHematological: Eosinophil count126 MB
hum0014.v8.FS.zipEchocardiographic: Fractional shortening123 MB
hum0014.v8.Fbg.zipOther biochemical: Fibrinogen124 MB
hum0014.v8.GGT.zipLiver-related: Gamma-glutamyl transferase127 MB

1–20 / 59

Analysis method

Genotyping by array

Materials and participants
162,255 individuals for 58 quantitative traits
Sample description
DNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Platform
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
Genotyping QC: sample call rate < 0.98, SNV call rate < 0.99, HWE P < 1 x 10^-6
QC for reference panel:
After excluding 11 closely related individuals, variants with HWE P < 1.0 x 10^-6, MAF < 0.01 were excluded.
QC after imputation:
Variants with imputation quality of Rsq < 0.7 were excluded.
Imputation
minimac [imputation (1000 genomes Phase I v3)]
Analysis method
GenCall software (GenomeStudio)
Variant count
Autosomes: 5,961,600 SNVs
X chromosome: 147,353 SNVs
Data use policy
NBDC data sharing policy (JGAP000001)