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Dataset ID

NHA000070

Type of data
GWAS for 58 quantitative traits
Access criteria
Unrestricted-access
Total data volume
7.3 GB
File formats
  • MAP
  • HTML
  • ZIP
Research
hum0014
Date published
2018-05-01
Date modified
2018-05-01
Secondary ID
hum0014.v8.58qt.v1

Unrestricted-access files linked to this dataset

Download the URL list
Per page
20
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21–40 / 59

FileLabelSizeCopy URL
hum0014.v8.HDL.zipMetabolic: High density lipoprotein cholesterol126 MB
hum0014.v8.Hb.zipHematological: Hemoglobin127 MB
hum0014.v8.HbA1c.zipMetabolic: Hemoglobin A1c126 MB
hum0014.v8.Ht.zipHematological: Hematocrit127 MB
hum0014.v8.IVS.zipEchocardiographic: Interventricular septum thickness123 MB
hum0014.v8.K.zipElectrolyte: Potassium127 MB
hum0014.v8.LDH.zipOther biochemical: Lactate dehydrogenase127 MB
hum0014.v8.LDL.zipMetabolic: Low density lipoprotein cholesterol126 MB
hum0014.v8.LVDd.zipEchocardiographic: Left ventricular internal dimension in diastole123 MB
hum0014.v8.LVDs.zipEchocardiographic: Left ventricular internal dimension in systole123 MB
hum0014.v8.LVM.zipEchocardiographic: Left ventricular mass124 MB
hum0014.v8.LVMI.zipEchocardiographic: Left ventricular mass index124 MB
hum0014.v8.Lym.zipHematological: Lymphocyte count126 MB
hum0014.v8.MAP.zipBlood pressure: Mean arterial pressure127 MB
hum0014.v8.MCH.zipHematological: Mean corpuscular hemoglobin127 MB
hum0014.v8.MCHC.zipHematological: Mean corpuscular hemoglobin concentration127 MB
hum0014.v8.MCV.zipHematological: Mean corpuscular volume127 MB
hum0014.v8.Mono.zipHematological: Monocyte count126 MB
hum0014.v8.NAP.zipProtein: Non-albumin protein126 MB
hum0014.v8.Na.zipElectrolyte: Sodium127 MB

21–40 / 59

Analysis method

Genotyping by array

Materials and participants
162,255 individuals for 58 quantitative traits
Sample description
DNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Platform
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
Genotyping QC: sample call rate < 0.98, SNV call rate < 0.99, HWE P < 1 x 10^-6
QC for reference panel:
After excluding 11 closely related individuals, variants with HWE P < 1.0 x 10^-6, MAF < 0.01 were excluded.
QC after imputation:
Variants with imputation quality of Rsq < 0.7 were excluded.
Imputation
minimac [imputation (1000 genomes Phase I v3)]
Analysis method
GenCall software (GenomeStudio)
Variant count
Autosomes: 5,961,600 SNVs
X chromosome: 147,353 SNVs
Data use policy
NBDC data sharing policy (JGAP000001)