Research ID
hum0327-v1Release info
Research title
Screening of neoantigens and neoantigen reactive T cell receptors in hepatobiliary and pancreatic cancer for clinical application of personalized T cell therapy
Research overview
- Aims
- Cancers in the hepatobiliary and pancreatic regions are not only common but also difficult to cure. Recently, it has been reported that mutant peptides newly generated by genetic mutations are recognized by the immune system as neoantigens, and the development of immunotherapy targeting these peptides has been promoted. In this study, in order to develop effective immunotherapy for hepatobiliary and pancreatic cancers and to propose it as a new cancer therapy, we will first identify different genetic mutations and antigens in each patient with these cancers, and then verify the practicality of immunotherapy using a diverse population of T cells that recognize them.
- Methods
- Paired fresh normal and tumor tissues were collected from surgically resected HCC and mCRC. RNA and genomic DNA were extracted from tumor/normal tissues (2-5 mm in diameter) and used for whole exome sequencing or RNA sequencing with NextSeq 550 (Illumina).
- Participants/materials
- Tumor tissues were collected from liver cancer patients, who were received surgical resection at the National Cancer Center Hospital East (NCCE) between 2017 and 2020.
- URL
- N/A
Datasets
| Cart | Dataset ID | Type of data | Analysis method | Access criteria | Date published |
|---|---|---|---|---|---|
| JGAD000624 | NGS (Exome, RNA-seq) |
| Controlled-access (Type I) | 2022-02-14 |
Data provider
- Principal investigator
- Toshihiro Suzuki
- Affiliation
- Division of Cancer Immunotherapy, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center
Research projects
| Name | URL |
|---|---|
Development of personalize neoantigen vaccine |
Grants
| Name | Title | Project number |
|---|---|---|
Collaboration funding from BrightPath Biotherapeutics Co., Ltd. | Development of the methodology for individualized neoantigen vaccine therapy |
|
Related publications
| Title | DOI | Dataset ID |
|---|---|---|
Development of antigen-prediction algorithm for personalized neoantigen vaccine using human leukocyte antigen transgenic mouse |
Controlled access users
| Principal investigator | Affiliation | Country/Region | Research title | Period of data use | Dataset ID |
|---|---|---|---|---|---|
| Michiaki Hamada | Hamada Laboratory, Faculty of Science and Engineering, Waseda University | Japan | Construction of RNA-targeted Drug Discovery Database | 2023-01-05 – 2027-10-31 |