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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000624

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
1.0 TB
File formats
  • FASTQ
  • VCF
  • TSV
Research
hum0327
Date published
2022-02-14
Date modified
2022-02-14
DDBJ Search
JGAD000624 (opens in a new tab)
JGA Study
JGAS000507 (opens in a new tab)

Analysis method

WES

Materials and participants
hepatocellular carcinoma (ICD10: C22.0): 28 cases
metastatic colorectal carcinoma (ICD10: C22.7): 18 cases
tumor and paired non-tumor tissues
  • Health status
    Affected
  • Subject count
    46 (Individual)
Disease
hepatocellular carcinoma (C220)
metastatic colorectal carcinoma (C227)
Sample description
DNAs extracted from tumor and non-tumor tissues
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect XT Reagent Kit
Fragmentation
Ultrasonic fragmentation (Covaris S220)
Platform
Illumina NextSeq 550
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
hepatocellular carcinoma (ICD10: C22.0): 28 cases
metastatic colorectal carcinoma (ICD10: C22.7): 18 cases
tumor and paired non-tumor tissues
  • Health status
    Affected
  • Subject count
    46 (Individual)
Disease
hepatocellular carcinoma (C220)
metastatic colorectal carcinoma (C227)
Sample description
RNAs extracted from tumor and non-tumor tissues
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
SureSelect Strand-Specific RNA Library Prep Kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris S220)
Platform
Illumina NextSeq 550
Read type
Paired-end
Read length
75 bp
Data use policy
NBDC data sharing policy (JGAP000001)