Research ID
hum0299-v1Release info
Latest
Research title
Analysis of chromosome background of cancerous mutations using a long read sequencer
Research overview
- Aims
- Whole genome sequencing using the newly available PromethION Q20 platform (Nanopore) to validate haplotype phasing analysis
- Methods
- Whole genome sequencing using the PromethION Q20 platform (Nanopore)
- Participants/materials
- Healthy white B-Lymphocyte cell line HG002 (NA24385)
- URL
- N/A
Datasets
| Cart | Dataset ID | Type of data | Analysis method | Access criteria | Date published |
|---|---|---|---|---|---|
| DRA012759 | NGS (WGS) |
| Unrestricted-access | 2021-12-01 |
Data provider
- Principal investigator
- Yutaka Suzuki
- Affiliation
- Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo
Research projects
No research projects.
Grants
| Name | Title | Project number |
|---|---|---|
KAKENHI Grant-in-Aid for Scientific Research on Innovative Areas | Identification of novel driver genes by whole genome sequencing of early stage lung tumors |
|
KAKENHI Grant-in-Aid for Scientific Research on Innovative Areas | Integrative analysis of structural variants and DNA methylation statuses in lung cancer genomes using long read sequencing |
|
KAKENHI Grant-in-Aid for Scientific Research on Innovative Areas | Platform for Advanced Genome Science |
|
Project for Cancer Research and Therapeutic Evolution (P-CREATE), Japan Agency for Medical Research and Development (AMED) | Stratification of cancer patients by novel genomic aberrations using long-read sequencing technologies |
|
Project for Cancer Research and Therapeutic Evolution (P-CREATE), Japan Agency for Medical Research and Development (AMED) | Understanding the diversity of lung cancer genomic mutations induced by passive smoking and formulating therapeutic strategies |
|
Related publications
| Title | DOI | Dataset ID |
|---|---|---|
Phasing analysis of lung cancer genomes using a long read sequencer |