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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0268-v1Release info

This page is a past version (v1). The latest version is v2.
Latest version (v2)

Research title

Direct and comprehensive identification of neoantigens using cancer tissues

Research overview

Aims
Proteogenomic discovery of a novel class of cancer antigens by HLA ligandome analysis of colon cancer tissues
Methods
RNA-seq, CAGE-seq and Iso-seq data were used to analyze the transcript variants coding an identified non-coding RNA-derived antigen.
Participants/materials
Human colon cancer cell line: 1, colon cancer: 6
URL
N/A

Datasets

The list is the one this version published; each dataset's content is shown as it is now.

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000386NGS (Iso-seq, CAGE-seq, RNA-seq)
  • Iso-seq
  • CAGE-seq
  • RNA-seq
Controlled-access (Type I)2021-04-09

Data provider

Principal investigator
Takayuki Kanaseki
Affiliation
Department of Pathology, Sapporo Medical University/Division of Molecular Pathology, Niigata University School of Medicine

Research projects

No research projects.

Grants

NameTitleProject number
Project for Cancer Research and Therapeutic Evolution (P-CREATE), Japan Agency for Medical Research and Development (AMED)
Proteogenomic discovery of HLA presented tumor antigens that arise from non-coding RNAs
  • JP20cm0106352

Related publications

No related publications.

Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Michiaki HamadaHamada Laboratory, Faculty of Science and Engineering, Waseda UniversityJapanConstruction of RNA-targeted Drug Discovery Database2023-01-05 – 2027-10-31