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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000386

Type of data
NGS (Iso-seq, CAGE-seq, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
153 GB
File formats
  • FASTQ
Research
hum0268
Date published
2021-04-09
Date modified
2021-04-09
DDBJ Search
JGAD000386 (opens in a new tab)
JGA Study
JGAS000280 (opens in a new tab)

Analysis method

Iso-seq

Materials and participants
Human colon cancer cell line (ICD10: C18): 1 sample
  • Health status
    Affected
  • Subject count
    1 (Sample)
Disease
Human colon cancer cell line (C18)
Sample description
RNAs extracted from cells
  • Tumor / normal
    Tumor
Cell line
COLO 320DM
Sample provider
ATCC (CCL-220)
Experimental method
Iso-seq
Target
N/A
Reagent kit
SMRTbell Template Prep Kit 2.0
Fragmentation
included in the above library construction kit
Platform
PacBio Sequel
Read type
Single-end
Read length
N/A
Data use policy
NBDC data sharing policy (JGAP000001)

CAGE-seq

Materials and participants
Human colon cancer cell line (ICD10: C18): 1 sample
  • Health status
    Affected
  • Subject count
    1 (Sample)
Disease
Human colon cancer cell line (C18)
Sample description
RNAs extracted from cells
  • Tumor / normal
    Tumor
Cell line
COLO 320DM
Sample provider
ATCC (CCL-220)
Experimental method
CAGE-seq
Target
N/A
Reagent kit
N/A
Fragmentation
N/A
Platform
Illumina NextSeq
Read type
Single-end
Read length
75 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
Human colon cancer cell line (ICD10: C18): 1 sample
Colon cancer: 6 patients
(6 tumor tissues and 5 non-tumor tissues)
Endometrial cancer (ICD10: C54.9): 5 patients (5 tumor tissues)
  • Health status
    Affected
  • Subject count
    12 (Mixed)
Disease
Human colon cancer cell line (C18)
Endometrial cancer (C549)
Sample description
RNAs extracted from cells
  • Tumor / normal
    Mixed
Cell line
COLO 320DM
Sample provider
ATCC (CCL-220)
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
included in the above library construction kit
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)