Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Research ID

hum0187-v1Release info

This page is a past version (v1). The latest version is v2.
Latest version (v2)

Research title

Genomic and genetic analysis of digestive tract cancer and elucidation of its clinicopathological significance.

Research overview

Aims
Impact of viral integration into the host genome on development of hepatocellular carcinoma
Methods
Virus capture sequencing (NGS), Exome (NGS), RNA-seq (NGS), DNA_methylation (Infinium450K)
Participants/materials
hepatocellular carcinoma
URL
N/A

Datasets

The list is the one this version published; each dataset's content is shown as it is now.

CartDataset IDType of dataAnalysis methodAccess criteriaDate published
JGAD000277NGS (Target Capture)
  • Targeted DNA sequencing
Controlled-access (Type I)2020-09-28

Data provider

Principal investigator
Hiroyuki Aburatani
Affiliation
RCAST, the University of Tokyo

Research projects

Grants

NameTitleProject number
Research on Development of New Medical Devices, Japan Agency for Medical Research and Development (AMED)
Clinical trial of cancer diagnosis assisting machine based on the mass spectrometry and artificial intelligence: Towards improving the survival rate of hepatic tumor and reducing medical expense
  • JP19hk0102049
Practical Research for Innovative Cancer Control, Japan Agency for Medical Research and Development (AMED)
Large-scale integrated genomic analysis of Japanese intractable and life-style related cancers as an international contribution to ICGC and WHO-lead collaborative researches towards precision cancer treatment and prevention
  • JP19ck0106265
Research Program on Hepatitis, Japan Agency for Medical Research and Development (AMED)
Study on the pathogenesis of metabolism-associated liver cancer including those associated with viral hepatitis
  • JP19fk0210040
KAKENHI Grant-in-Aid for Scientific Research (C)
Focal copy number alteration and its functional role in carcinogenesis: unmet needs in cancer genome analysis
  • 17K07195

Related publications

TitleDOIDataset ID
Impact of AAV2 and Hepatitis B Virus Integration Into Genome on Development of Hepatocellular Carcinoma in Patients with Prior Hepatitis B Virus Infection
https://doi.org/10.1158/1078-0432.CCR-18-4041 (opens in a new tab)
Accumulation of Molecular Aberrations Distinctive to Hepatocellular Carcinoma Progression
https://doi.org/10.1158/0008-5472.CAN-20-0225 (opens in a new tab)

Controlled access users

Principal investigatorAffiliationCountry/RegionResearch titlePeriod of data useDataset ID
Takashi KohnoDivision of Genome Biology, National Cancer Center Research InstituteJapanIdentification of genetic risk factors in AYA(Adolescence and Young Adult) cancer2021-12-02 – 2028-12-31
Jinyan HuangZhejiang University School of Medicine, 79 Qingchun Road, Hangzhou, 310003, Zhejiang, China. Biomedical big data center, the First Affiliated Hospital, Zhejiang UniversityChinaComprehensive analysis of alternative splicing in malignant tumors2022-03-15 – 2024-01-01
Jian CaoJian Cao Lab, Rutgers Cancer Institute of New Jersey, Rutgers, The State University of New JerseyNew Jersey, United StatesAnalyzing oncovirus in NBDC tumor sequencing data2023-01-12 – 2026-03-12
Michiaki HamadaHamada Laboratory, Faculty of Science and Engineering, Waseda UniversityJapanConstruction of RNA-targeted Drug Discovery Database2023-01-05 – 2027-10-31