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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000277

Type of data
NGS (Target Capture)
Access criteria
Controlled-access (Type I)
Total data volume
688 GB
File formats
  • FASTQ
Research
hum0187
Date published
2020-09-28
Date modified
2020-11-18
DDBJ Search
JGAD000277 (opens in a new tab)
JGA Study
JGAS000194 (opens in a new tab)

Analysis method

Targeted DNA sequencing

Materials and participants
hepatocellular carcinoma (ICD10: C220): 243 cases
tumor tissue: 243 samples
non-tumor tissue: 59 samples
  • Health status
    Affected
  • Subject count
    243 (Individual)
Disease
hepatocellular carcinoma (C220)
Sample description
gDNAs extracted from tumor and non-tumor tissues of hepatocellular carcinoma
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
Virus integration site (including viral genome sequences, viral-human fusion sequences, and nonspecific human genome sequences)
Reagent kit
SureSelect Custom
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina MiSeq
Read type
Paired-end
Read length
200 bp (Approx.)
Data use policy
NBDC data sharing policy (JGAP000001)