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Dataset ID

NHA000191

Type of data
The weights of variants calculated from GWAS results on type 2 diabetes
Access criteria
Unrestricted-access
Total data volume
66.6 MB
File formats
  • DOCX
  • ZIP
Research
hum0197
Date published
2024-05-29
Date modified
2024-05-29
Secondary ID
hum0197.v19.prs.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
PGS_Catalog_T2D.docxDictionary file21.3 KB
hum0197.v19.prs.v1.zip66.5 MB

Analysis method

genome wide SNPs

Materials and participants
BioBank Japan
Type 2 diabetes (ICD10: E11): 27,642 cases
Control participants: 70,242
UK Biobank
Type 2 diabetes (ICD10: E11): 27,642 cases
Control participants: 70,242
  • Health status
    Mixed
  • Subject count
    195,768 (Individual)
  • Population
    European, Japanese
Disease
Type 2 diabetes (E11)
Sample description
DNAs extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanExome BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
UK BiLEVE Axiom Array
UK Biobank Axiom Array
Platform
Applied Biosystems UK BiLEVE Axiom Array
Applied Biosystems UK Biobank Axiom Array
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
QC and filtering
Variants with imputation quality of Rsq < 0.3 or minor allele frequency
(MAF) < 1% were excluded
The details are described below
https://doi.org/10.1038/s41588-024-01782-y
Imputation
BBJ: Eagle, Minimac3
UK Biobank: IMPUTE4
Analysis method
plink2
Variant count
BBJ second cohort: 728,824 variants
ToMMo: 855,161 variants
Processed data type
Polygenic risk score
Phenotype data
Included
Data use policy
NBDC data sharing policy (JGAP000001)