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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000180

Type of data
GWAS for survival time in 137,693 individuals from BBJ 1st cohort
Access criteria
Unrestricted-access
Total data volume
215 MB
File formats
  • HTML
  • ZIP
Research
hum0014
Date published
2022-12-31
Date modified
2022-12-31
Secondary ID
hum0014.v27.surv.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
Readme_2023_BBJ_SurvivalGWAS.htmlDictionary file26.0 KB
hum0014.v27.surv.v1.zip215 MB

Analysis method

Genotyping by array (GWAS)

Materials and participants
137,693 individuals from BBJ 1st cohort
  • Subject count
    137,693 (Individual)
  • Cohort
    BioBank Japan
  • Population
    Japanese
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanExome BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
Genotyping QC: sample call rate < 0.98, SNV call rate < 0.99, HWE P < 1 x 10^-6
QC for reference panel:
After excluding 11 closely related individuals, variants with HWE P < 1.0 x 10^-6, MAF < 0.01 were excluded.
QC after imputation:
Variants with imputation quality of Rsq < 0.7 were excluded.
Imputation
minimac [imputation (1000 genomes Phase I v3)]
Analysis method
GenCall software (GenomeStudio)
Variant count
6,108,833 variants
Processed data type
Variant calls
Data use policy
NBDC data sharing policy (JGAP000001)