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Dataset ID

NHA000170

Type of data
GWAS for 329 patients with chronic HBV infection and 318 healthy controls
Access criteria
Unrestricted-access
Total data volume
187 MB
File formats
  • XLSX
  • ZIP
Research
hum0075
Date published
2022-05-27
Date modified
2022-05-27
Secondary ID
hum0075.v3.Thai-gwas.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0075.v3.Thai-gwas.v1.zip187 MB
hum0075.v3.Thai-gwas.v1_header.xlsxDictionary file9.9 KB

Analysis method

Genotyping by array

Materials and participants
329 patients with chronic HBV infection (ICD10: B169)
[including liver cancer (ICD10: C220) patients]
318 healthy controls
  • Health status
    Mixed
  • Subject count
    647 (Individual)
  • Population
    Thai
Disease
patients with chronic HBV infection (B169)
liver cancer (C220)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
Axiom 2.0 Reagent Kit
Platform
Affymetrix Axiom Genome-Wide ASI 1 Array
Reference genome
GRCh37
QC and filtering
pre-imputation QC: SNP call rate < 0.97, MAF P < 0.01, HWE P < 1 x10^-6
after imputation QC: SNPs with an info metric < 0.8 were excluded.
Imputation
IMPUTE2 v2.3.2 software
Analysis method
Genotyping Console v4.2.0.26 software
Variant count
6,317,183 (autosomal variants)
Processed data type
Variant calls
Data use policy
NBDC data sharing policy (JGAP000001)