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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000149

Type of data
GWAS for coronary artery disease
Access criteria
Unrestricted-access
Total data volume
366 MB
File formats
  • TXT
  • ZIP
Research
hum0014
Date published
2020-08-17
Date modified
2020-08-17
Secondary ID
hum0014.v20.cad.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0014_v20_README_CAD_GWAS.txtDictionary file1.9 KB
hum0014_v20_gwas_v1.zipsummary statistics365 MB
hum0014_v20_prs_v1.zippolygenic risk score775 KB

Analysis method

Genotyping by array (GWAS)

Materials and participants
25,892 coronary artery disease patients (ICD10: I20-25) and 142,336 controls
  • Health status
    Mixed
  • Subject count
    142,336 (Individual)
Disease
coronary artery disease patients (I20, I21, I22, I23, I24, I25)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanExome BeadChip Kit
HumanOmniExpress BeadChip Kit
HumanOmniExpressExome BeadChip Kit
Platform
Illumina HumanExome
Illumina HumanOmniExpress
Illumina HumanOmniExpressExome
Reference genome
GRCh37
QC and filtering
QC after imputation: Variants with imputation quality of Rsq < 0.3 and MAF < 0.0002 were excluded.
Imputation
minimac3 (BBJ-CAD reference panel)
Analysis method
GenCall software (GenomeStudio)
Variant count
Autosomes: 19,707,525 variants
Data use policy
NBDC data sharing policy (JGAP000001)