Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000074

Type of data
GWAS for HCC development after eradication of HCV by IFN-based treatment
123 patients who developed HCC
333 patients who did not develop HCC
Access criteria
Unrestricted-access
Total data volume
33.6 KB
File formats
  • XLSX
Research
hum0074
Date published
2018-09-25
Date modified
2018-09-25
Secondary ID
hum0074.v2.hcc.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0074.v2.hcc.v1.xlsx21.7 KB
hum0074.v2_header.xlsxDictionary file11.9 KB

Analysis method

Genotyping by array

Materials and participants
HCC development after eradication of HCV by IFN-based treatment (ICD10: C220)
123 patients who developed HCC
333 patients who did not develop HCC
  • Health status
    Affected
  • Subject count
    456 (Individual)
Disease
HCC development after eradication of HCV by IFN-based treatment (C220)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
Axiom 2.0 Reagent Kit
Platform
DigiTag2 assay
TaqMan SNP Genotyping Assays
Affymetrix Axiom Genome-Wide ASI 1 Array
Reference genome
NCBI36
QC and filtering
Sample call rate < 0.95, SNP call rate < 0.95, MAF < 0.05,
HWE P < 0.001, Chi-square test (allelic model) P < 1 x 10^-4
Analysis method
Genotyping Console v4.1
Variant count
70 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)