Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000064

Type of data
GWAS for 78 NVR and 64 VR
GWAS for 78 NVR and 51 SVR
Access criteria
Unrestricted-access
Total data volume
15.2 KB
File formats
  • XLSX
  • ZIP
Research
hum0074
Date published
2018-02-27
Date modified
2018-02-27
Secondary ID
hum0074.v1.vr.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0074.v1.vr.v1.zip2.8 KB
hum0074.v1_header.xlsxDictionary file12.4 KB

Analysis method

Genotyping by array

Materials and participants
virologic response
78 null virologic response
64 virologic response
51 sustained virologic response
  • Health status
    Affected
  • Subject count
    193 (Individual)
Sample description
gDNA extracted from peripheral blood cells
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
Genome-Wide Human SNP Array 6.0 Kit
Platform
Affymetrix Genome-Wide Human SNP Array 6.0
Reference genome
NCBI36
QC and filtering
Sample call rate < 0.95, SNP call rate < 0.95,
HWE P < 0.001, Chi-square test (allelic model) P < 1 x 10^-4
Analysis method
Birdseed version 3
Variant count
NVR vs VR: 43 SNPs
NVR vs SVR: 2 SNPs
Data use policy
NBDC data sharing policy (JGAP000001)