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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
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Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000059

Type of data
GWAS for psoriasis
Access criteria
Unrestricted-access
Total data volume
6.3 MB
File formats
  • XLSX
  • ZIP
Research
hum0114
Date published
2017-12-18
Date modified
2017-12-18
Secondary ID
hum0114.v1.gwas.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
hum0114.v1.gwas.v1.zip6.3 MB
hum0114_header_definition.xlsxDictionary file10.9 KB

Analysis method

Genotyping by array

Materials and participants
282 psoriasis patients (ICD10: L400)
426 healthy controls
  • Health status
    Mixed
  • Subject count
    708 (Individual)
  • Population
    Japanese
Disease
psoriasis patients (L400)
Sample description
DNA extracted from B cell lines of Japanese ancestry
  • Tumor / normal
    Normal
Cell line
JBIC cell line
Sample provider
http://www.jbic.or.jp/enterprise/developer/013.html
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanCoreExome BeadChip Kit
Platform
Illumina HumanCoreExome
Reference genome
GRCh37
QC and filtering
sample call rate < 0.99, SNP call rate < 0.99, HWE-P < 1x10^-7
Analysis method
GenCall software (GenomeStudio)
Variant count
255,632 SNPs (Autosomes)
Processed data type
GWAS summary statistics
Data use policy
NBDC data sharing policy (JGAP000001)