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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

NHA000003

Type of data
genotype counts of 2.5 million SNPs
Access criteria
Unrestricted-access
Total data volume
70.6 MB
File formats
  • XLSX
  • PNG
  • ZIP
Research
hum0013
Date published
2014-10-16
Date modified
2014-10-16
Secondary ID
hum0013.v1.freq.v1

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
Count.png19.1 KB
SNPs_eachChr.png35.6 KB
SampleNo_eachArea.png29.8 KB
hum0013.v1.freq.v1.zip70.5 MB
hum0013_header_definition.xlsxDictionary file10.0 KB

Analysis method

Genotyping by array

Materials and participants
2994 Japanese healthy controls
  • Health status
    Healthy
  • Subject count
    2994 (Individual)
  • Population
    Japanese
Sample description
DNAs extracted from peripheral blood
  • Tissue
    Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
Genotyping by array
Target
N/A
Reagent kit
HumanOmni2.5 BeadChip Kit
Platform
Illumina HumanOmni2.5
QC and filtering
Call Rate ≧ 0.95 and HWE ≧ 0.001
Analysis method
GenomeStudio
Variant count
2,343,307 SNVs (/files/hum0013/SNPs_eachChr.png)
Data use policy
NBDC data sharing policy (JGAP000001)