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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD001019

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Research
hum0553
DDBJ Search
JGAD001019 (opens in a new tab)

Analysis method

WES

Materials and participants
colorectal cancer (ICD10: C18, C78.7): 1 case
patient-derived organoids from liver metastases: 4 samples
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
  • colorectal cancer
Sample description
DNA extracted from patient-derived organoids from liver metastases
  • Tissue
    Liver
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
Twist Comprehensive Exome Panel
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
colorectal cancer (ICD10: C18, C78.7): 1 case
patient-derived organoids from liver metastases: 6 samples
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
  • colorectal cancer
Sample description
RNA extracted from patient-derived organoids from liver metastases
  • Tissue
    Liver, Organoid
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
chemical fragmentation
Platform
Illumina NovaSeq 6000
Read type
Single-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)