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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD001002

Type of data
NGS (WGS, scRNA-seq, ATAC-seq)
Access criteria
Controlled-access (Type I)
Total data volume
680 GB
File formats
  • FASTQ
Research
hum0536
Date published
2026-04-09
Date modified
2026-04-09
DDBJ Search
JGAD001002 (opens in a new tab)
JGA Study
JGAS000859 (opens in a new tab)

Analysis method

WGS

Materials and participants
Pleural mesothelioma (ICD10: C45.0): 1 case
tumor tissues: 2 samples
  • Health status
    Affected
  • Subject count
    1 (Mixed)
Disease
Pleural mesothelioma (C450)
Sample description
DNAs extracted from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
Illumina DNA PCR-Free Prep
Fragmentation
Transposome-mediated on-bead tagmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)

scRNA-seq

Materials and participants
Pleural mesothelioma (ICD10: C45.0): 1 case
tumor tissue: 1 sample
Patient-derived xenograft (PDX) tumor model specimen: 2 samples
  • Health status
    Affected
  • Subject count
    1 (Mixed)
Disease
Pleural mesothelioma (C450)
Sample description
RNAs extracted from enzymatically dissociated tumor samples
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
scRNA-seq
Target
N/A
Reagent kit
Chromium Next GEM Single Cell 5' v2
Fragmentation
Enzymatic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
Read1: 26 bp
Read2: 90 bp
Data use policy
NBDC data sharing policy (JGAP000001)

ATAC-seq

Materials and participants
Pleural mesothelioma (ICD10: C45.0): 1 case
Patient-derived cell line: 2 samples
  • Health status
    Affected
  • Subject count
    1 (Mixed)
Disease
Pleural mesothelioma (C450)
Sample description
DNAs extracted from cell line
  • Tumor / normal
    Tumor
Cell line
Patient-derived cell line
Sample provider
N/A
Experimental method
ATAC-seq
Target
N/A
Reagent kit
ATAC-Seq Kit
Fragmentation
included in the above library construction kit
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)