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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000986

Type of data
NGS (ATAC-seq)
Access criteria
Controlled-access (Type I)
Total data volume
69.4 GB
File formats
  • BAM
Research
hum0535
Date published
2025-10-20
Date modified
2025-10-20
DDBJ Search
JGAD000986 (opens in a new tab)
JGA Study
JGAS000844 (opens in a new tab)

Analysis method

ATAC-seq

Materials and participants
Psoriasis: 6 cases
psoriatic skin: 6 samples
clinically healed skin: 6 samples
healthy control skin: 5 samples
  • Health status
    Affected
  • Subject count
    6 (Individual)
Disease
Psoriasis (L40)
Sample description
DNAs extracted from epidermal keratinocytes isolated from skin samples
  • Tissue
    Keratinocyte, Skin
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
ATAC-seq
Target
N/A
Reagent kit
Illumina Tagment DNA TDE1 Enzyme and Buffer Kits
Fragmentation
Tn5 transposase-mediated tagmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh38
QC and filtering
Bioanalyzer, FastQC
Analysis method
FastQC, Bowtie2, MACS2
Data use policy
NBDC data sharing policy (JGAP000001)