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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000978

Type of data
NGS (Amplicon-seq)
Access criteria
Controlled-access (Type I)
Total data volume
7.2 GB
File formats
  • FASTQ
Research
hum0531
Date published
2025-11-12
Date modified
2025-11-12
DDBJ Search
JGAD000978 (opens in a new tab)
JGA Study
JGAS000836 (opens in a new tab)

Analysis method

RNA Amplicon-seq

Materials and participants
advanced urothelial carcinoma (ICD10: C67, C65, C66): 15 cases
tumor tissues (FFPE): 15 samples
cfDNA (plasma): 50 samples
  • Health status
    Affected
  • Subject count
    15 (Individual)
Disease
advanced urothelial carcinoma (C67, C65, C66)
Sample description
DNAs extracted from tumor tissues and cfDNA
  • Tissue
    Plasma
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Amplicon-seq
Target
TP53, FGFR3, TERT, KRAS/HRAS
Fragmentation
FFPE: Ultrasonic fragmentation (Covaris)
plasma cfDNA: -
Platform
Thermo Fisher Scientific Ion PGM
Thermo Fisher Scientific Ion S5
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)