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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000909

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Research
hum0489
DDBJ Search
JGAD000909 (opens in a new tab)

Analysis method

WES

Materials and participants
myxoid liposarcoma: 43 cases, tumor tissue: 43 samples
myxoid liposarcoma cell-line (402-91, 1955-91, 2645-94): 3 samples
  • Health status
    Affected
  • Subject count
    46 (Sample)
  • Population
    Japanese
Disease
  • myxoid liposarcoma
Sample description
DNA extracted from tumor tissues or cell-line cells
  • Tumor / normal
    Tumor
Sample provider
402-91, 1955-91, 2645-94: acquired via gift
1. Genes Chromosomes Cancer. 1992;5(4):278-85.
2. Int J Cancer. 1999 Sep 24;83(1):30-3.
Experimental method
WES
Target
N/A
Reagent kit
NEBNext Ultra II FS DNA Library Prep Kit for Illumina
SureSelect Human All Exon V6
SureSelect Human All Exon V7
Fragmentation
Ultrasonic fragmentation
Platform
Illumina NovaSeq X Plus
MGI DNBSEQ-G400
Read type
Paired-end
Read length
patient: 100 bp
cell-line: 150 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
myxoid liposarcoma: 72 cases
  • Health status
    Affected
  • Subject count
    72 (Sample)
  • Population
    Japanese
Disease
  • myxoid liposarcoma
Sample description
RNA extracted from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq RNA Exome
Fragmentation
Chemical fragmentation
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)