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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000840

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
927 GB
File formats
  • FASTQ
  • BAM
Research
hum0317
Date published
2024-06-11
Date modified
2024-06-11
DDBJ Search
JGAD000840 (opens in a new tab)
JGA Study
JGAS000707 (opens in a new tab)

Analysis method

WES

Materials and participants
Non-small cell lung cancer (ICD10: C349)
- germline tissues: 3 cases, 3 samples
- tumor tissues: 4 cases, 4 samples
- tumor tissues from PDX: 4 cases, 12 samples
Cancer (ICD10: C00-C97)
- germline tissues: 44 + 269 cases, 44 + 269 samples
- tumor tissues: 125 cases 125 samples
- tumor tissues from PDX: 52 + 269 cases, 52 + 795 samples
Cancer (52 cases)
  • Health status
    Affected
  • Subject count
    770 (Individual)
Disease
Non-small cell lung cancer (C349)
Cancer
Sample description
DNAs extracted from germline tissues, tumor tissues, and tumor tissues from PDX
  • Tissue
    PDX
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
Twist Comprehensive Exome Panel
Fragmentation
Enzymatic fragmentation, Ultrasonic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh38
GRCm38
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
Non-small cell lung cancer (ICD10: C349)
- tumor tissues: 2 cases, 2 samples,
- tumor tissues from PDX: 4 cases, 12 samples
Cancer (ICD10: C00-C97)
- tumor tissues from PDX: 51 cases, 51 samples
  • Health status
    Affected
  • Subject count
    57 (Individual)
Disease
Non-small cell lung cancer (C349)
Cancer
Sample description
RNAs extracted from tumor tissues and tumor tissues from PDX
  • Tissue
    PDX
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra Directional RNA Library Prep Kit for Illumina
Fragmentation
Heat treatment
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)