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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000794

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
9.4 GB
File formats
  • BAM
  • BAI
Research
hum0419
Date published
2024-06-18
Date modified
2024-06-18
DDBJ Search
JGAD000794 (opens in a new tab)
JGA Study
JGAS000664 (opens in a new tab)

Analysis method

WES

Materials and participants
pulmonary adenocarcinoma harboring EML4-ALK variant 3 (ICD10: C34.1, C34.3): 1 case
tumor-derived organoids: 1 sample
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
pulmonary adenocarcinoma harboring EML4-ALK variant 3 (C341, C343)
Sample description
DNAs extracted from tumor-derived organoids
  • Tissue
    Lung, Organoid
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V6
Fragmentation
Ultrasonic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
151 bp
Reference genome
GRCh37
Mapping
DRAGEN Bio-IT Platform 3.9.5
Mapping quality
N/A
Coverage (depth)
98.21x
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
mucus-producing solid-dominant adenocarcinoma of lung (ICD10: C34.1, C34.3): 1 case
tumor-derived organoids: 1 sample
pulmonary adenocarcinoma harboring EML4-ALK variant 3 (ICD10: C34.1, C34.3): 1 case
tumor-derived organoids: 1 sample
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
mucus-producing solid-dominant adenocarcinoma of lung (C341, C343)
pulmonary adenocarcinoma harboring EML4-ALK variant 3 (C341, C343)
Sample description
RNAs extracted from tumor-derived organoids
  • Tissue
    Lung, Organoid
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
Exposure to divalent cations at elevated temperatures
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
101 bp
Reference genome
GRCh37
Mapping
STAR-Fusion v1.9.0
Mapping quality
N/A
Data use policy
NBDC data sharing policy (JGAP000001)