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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000781

Type of data
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
90.8 GB
File formats
  • FASTQ
Research
hum0431
Date published
2024-01-25
Date modified
2024-01-25
DDBJ Search
JGAD000781 (opens in a new tab)
JGA Study
JGAS000651 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
Human iPSCs (HPS4290:201B7-Ff) introduced single variants identified in patients with ASD (ICD10: F840)
1) Mutant iPSC lines with the chr7:g.26200781C>T variant and the single PAM sequence: 2 samples
Control lines with a single PAM sequence: 2 samples
2) Mutant iPSC lines with the chr22:g.19179942C>T variant and the single PAM sequence: 3 samples
Control lines with a single PAM sequence: 2 samples
  • Health status
    Mixed
  • Subject count
    9 (Sample)
Disease
ASD (F840)
Sample description
RNAs extracted from mutant iPSCs
  • Tissue
    iPSC
  • Tumor / normal
    Normal
Cell line
201B7-Ff
iPSC
Sample provider
RIKEN BRC
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra RNA Library Prep Kit for Illumina
Fragmentation
included in the above library construction kit
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)