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We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000747

Type of data
NGS (Exome, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
69.2 GB
File formats
  • FASTQ
Research
hum0401
Date published
2023-06-29
Date modified
2023-06-29
DDBJ Search
JGAD000747 (opens in a new tab)
JGA Study
JGAS000618 (opens in a new tab)

Analysis method

WES

Materials and participants
giant cell tumor of bone (ICD10: C419): 1 case
tumor tissue (2nd operation): 1 sample
tumor tissue (3rd operation): 1 sample
organoid derived xenograft tumor: 1 sample
  • Health status
    Mixed
  • Subject count
    10 (Mixed)
Disease
  • giant cell tumor of bone
Sample description
DNAs extracted from normal and tumor tissues
  • Tissue
    Muscle, PDX
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V6
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina NovaSeq 6000
Illumina NovaSeq X Plus
Read type
Paired-end
Read length
150 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
giant cell tumor of bone (ICD10: C419): 1 case
normal muscle tissue: 1 sample
tumor tissue (2nd operation): 1 sample
tumor tissue (3rd operation): 1 sample
patient derived organoid: 2 samples
organoid derived xenograft tumor: 3 samples
  • Health status
    Mixed
  • Subject count
    9 (Mixed)
Disease
  • giant cell tumor of bone
Sample description
RNAs extracted from normal and tumor tissues
  • Tissue
    Muscle, Organoid, PDX
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
MGIEasy RNA Directional Library Prep Set
Fragmentation
Heat treatment
Platform
MGI DNBSEQ-G400
MGI DNBSEQ-T7
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)