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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000735

Type of data
NGS (scRNA-seq, scATAC-seq)
Access criteria
Controlled-access (Type I)
Total data volume
318 GB
File formats
  • FASTQ
Research
hum0391
Date published
2024-09-25
Date modified
2024-09-25
DDBJ Search
JGAD000735 (opens in a new tab)
JGA Study
JGAS000606 (opens in a new tab)

Analysis method

scRNA-seq + scATAC-seq

Materials and participants
Tongue cancer (ICD10: C01, C02): 4 cases
organoids established from tumor tissues: 4 samples
  • Health status
    Affected
  • Subject count
    4 (Individual)
Disease
Tongue cancer (C01, C02)
Sample description
DNAs/RNAs extracted from organoids
  • Tissue
    Organoid
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
scATAC-seq
scRNA-seq
Target
N/A
Reagent kit
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression
Fragmentation
Enzymatic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
scRNA-seq: 118 bp
scATAC-seq: 99 bp
Data use policy
NBDC data sharing policy (JGAP000001)