Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000704

Type of data
NGS (scRNA-seq, scVDJ-seq)
Access criteria
Controlled-access (Type I)
Total data volume
511 GB
File formats
  • FASTQ
  • TSV
Research
hum0379
Date published
2023-11-20
Date modified
2023-11-20
DDBJ Search
JGAD000704 (opens in a new tab)
JGA Study
JGAS000578 (opens in a new tab)

Analysis method

scRNA-seq + scVDJ-seq

Materials and participants
MG (ICD10: G70.0): 2 cases (CD4+ T cell and B cell specimens each)
MS (ICD10: G35): 4 cases (3 cases of CD4+ T cell and B cell specimens each + 1 mixed CD4+ T cell and B cell specimen)
SLE (ICD10: M32.9): 3 cases (3 cases of CD4+ T cell and B cell specimens each + 1 CD4+ T cell pecimen)
3 healthy cases (CD4+ T cell and B cell specimens each)
  • Health status
    Mixed
  • Subject count
    12 (Individual)
Disease
MG (G700)
MS (G35)
SLE (M329)
Sample description
RNAs extracted from CD4+ T cell and B cell isolated from peripheral blood
  • Tissue
    B cell, CD4+ T cell
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
scRNA-seq
VDJ-seq
Target
N/A
Reagent kit
Chromium Next GEM Single Cell 5' v2
Chromium Single Cell Human BCR Amplification Kit
Chromium Single Cell Human TCR Amplification Kit
Fragmentation
included in the above library construction kit
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
91 bp
Data use policy
NBDC data sharing policy (JGAP000001)