Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000696

Type of data
NGS (WGS: NovaSeq 6000)
NGS (WGS: PromethION)
NGS (RNA-seq : NovaSeq 6000, HiSeq 2000)
NGS (Target Capture)
NGS (Visium Spatial Gene Expression), Histological image
Multiplex Fluorescence Immunostaining
Access criteria
Controlled-access (Type I)
Total data volume
24.0 TB
File formats
  • FASTQ
  • TSV
  • CSV
  • XLSX
  • JSON
  • MTX
  • PNG
  • QPTIFF
  • TAR
Research
hum0068
Date published
2023-02-10
Date modified
2026-09-26
DDBJ Search
JGAD000696 (opens in a new tab)
JGA Study
JGAS000570 (opens in a new tab)

Unrestricted-access files linked to this dataset

Download the URL list
FileLabelSizeCopy URL
cycle_probe_info_JGAD000696.pdfcycle/probe information for JGAD000696191 KB
gene_list_302.pdf302 genes153 KB

Analysis method

WGS

Materials and participants
lung adenocarcinoma (ICD10: C349): 21 + 56 cases (42 + 112 samples)
tumor tissues: 21 + 56 samples
normal tissues: 21 + 56 samples
  • Health status
    Affected
  • Subject count
    77 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
DNAs extracted from tumor and normal tissues of lung adenocarcinomas
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
TruSeq DNA PCR-Free Library Prep Kit
TruSeq Nano DNA Library Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
N/A
Dataset ID of processed data
JGAD000670
Processing method
Whole Genome Sequencing Analysis (germline)
Data use policy
NBDC data sharing policy (JGAP000001)

WGS

Materials and participants
lung adenocarcinoma (ICD10: C349): 21 + 42 cases (41 + 8 + 81 samples)
tumor tissues: 21 + 4 + 42 samples
normal tissues: 20 + 4 + 39 samples
  • Health status
    Affected
  • Subject count
    63 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
DNAs extracted from tumor and normal tissues of lung adenocarcinomas
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
Ligation Sequencing Kit (SQK-LSK109)
Fragmentation
N/A
Platform
Oxford Nanopore Technologies PromethION
Read type
Single-end
Read length
N/A
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
lung adenocarcinoma (ICD10: C349): 6 + 5 + 26 cases (12 + 5 + 26 samples)
tumor tissues: 6 + 5 + 26 samples
normal tissues: 6 samples
  • Health status
    Affected
  • Subject count
    37 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
RNAs extracted from tumor and normal tissues of lung adenocarcinomas
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
Nextera XT DNA Library Prep Kit
SMART-Seq Stranded Kit
SMART-Seq v4 Ultra Low Input RNA Kit
TruSeq Stranded mRNA Library Prep Kit
TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero Gold
Fragmentation
Tagmentation (Nextera XT DNA Library Preparation Kit)
Platform
Illumina HiSeq 2000
Illumina NovaSeq 6000
Read type
Paired-end
Read length
300 bp
Data use policy
NBDC data sharing policy (JGAP000001)

Targeted DNA sequencing

Materials and participants
lung adenocarcinoma (ICD10: C349): 36 cases
tumor tissues: 36 samples
  • Health status
    Affected
  • Subject count
    36 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
DNAs extracted from tumor tissues of lung adenocarcinomas
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
NCC Oncopanel v2
https://www.ncc.go.jp/en/information/press_release/20190717/20190717152024.html
Reagent kit
NCC Oncopanel
Fragmentation
N/A
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
300 bp
Data use policy
NBDC data sharing policy (JGAP000001)

Multiplex Fluorescence Immunostaining

Materials and participants
lung adenocarcinoma (ICD10: C349): 3 + 6 cases
tumor tissues: 3 + 6 samples
  • Health status
    Affected
  • Subject count
    9 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
tumor tissues of lung adenocarcinomas
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Multiplex fluorescence immunostaining
Target
cycle/probe information
Sample processing
Cell treatment: Staining Kit for PhenoCycler
Platform
Akoya Biosciences PhenoCycler
Data use policy
NBDC data sharing policy (JGAP000001)

Xenium 空間トランスクリプトーム

Materials and participants
lung adenocarcinoma (ICD10: C349): 1 + 1 + 10 cases
tumor tissues: 1 + 1 + 10 samples
  • Health status
    Affected
  • Subject count
    12 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
tumor tissues of lung adenocarcinomas
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Spatial transcriptomics
Target
302 genes (Human Lung panel: 202 genes, custom: 100 genes)
Reagent kit
Xenium Decoding Consumables
Xenium Decoding Reagents
Xenium Slides & Sample Prep Reagents
Platform
10x Genomics Xenium Analyzer
Analysis method
xenium-1.1.0.2
xenium-1.5.1.2
Data use policy
NBDC data sharing policy (JGAP000001)

Visium 空間トランスクリプトーム + 病理画像

Materials and participants
lung adenocarcinoma (ICD10: C349): 3 + 19 cases
tumor tissues: 3 + 25 samples
  • Health status
    Affected
  • Subject count
    22 (Individual)
Disease
lung adenocarcinoma (C349)
Sample description
RNAs extracted from tumor tissues of lung adenocarcinomas
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Histological image
Spatial transcriptomics
Target
N/A
Reagent kit
Visium Spatial Gene Expression
Fragmentation
N/A
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
118 bp
Data use policy
NBDC data sharing policy (JGAP000001)