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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000695

Type of data
NGS (CAGE-seq)
Access criteria
Controlled-access (Type I)
Total data volume
457 GB
File formats
  • BAM
Research
hum0365
Date published
2023-06-12
Date modified
2023-06-12
DDBJ Search
JGAD000695 (opens in a new tab)
JGA Study
JGAS000569 (opens in a new tab)

Analysis method

CAGE-seq

Materials and participants
normoglycemic individuals: 103 cases
obese (ICD10: E669): 98 cases
pre-diabetes (ICD10: E11, R730): 97 cases
  • Health status
    Mixed
  • Subject count
    298 (Individual)
Disease
obese (E669)
pre-diabetes (E11, R730)
Sample description
RNAs extracted from peripheral blood mononuclear cells
  • Tissue
    PBMC, Peripheral blood
  • Tumor / normal
    Normal
Sample provider
N/A
Experimental method
CAGE-seq
Target
N/A
Reagent kit
nanoCAGE (dual index)
Fragmentation
N/A
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
50 bp
Reference genome
GRCh38
Mapping
BWA version 0.5.9
Mapping quality
rDNA and low quality read filtering with MOIRAI pipeline (Hasegawa et al., BMC Bioinformatics 2014)
Coverage (depth)
N/A
Coverage (breadth)
N/A
Data use policy
NBDC data sharing policy (JGAP000001)