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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000654

Type of data
NGS (WGS)
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
812 GB
File formats
  • FASTQ
Research
hum0316
Date published
2022-05-25
Date modified
2022-05-25
DDBJ Search
JGAD000654 (opens in a new tab)
JGA Study
JGAS000535 (opens in a new tab)

Analysis method

WGS

Materials and participants
esophageal squamous cell carcinoma (ICD10: C15.9): 81 cases (Of these, 71 cases also underwent RNA-seq analysis)
tumor tissues: 81 samples
non-tumor tissues: 81 samples
  • Health status
    Affected
  • Subject count
    81 (Individual)
Disease
esophageal squamous cell carcinoma (C159)
Sample description
DNAs extracted from tumor tissues and non-tumor tissues from esophageal squamous cell carcinoma patients
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
TruSeq DNA Sample Prep Kit
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina HiSeq 2000
Illumina HiSeq 2500
Read type
Paired-end
Read length
125 bp
Data use policy
NBDC data sharing policy (JGAP000001)

RNA-seq

Materials and participants
esophageal squamous cell carcinoma (ICD10: C15.9): 100 cases (Of these, 71 cases also underwent WGS analysis)
tumor tissues: 100 samples
  • Health status
    Affected
  • Subject count
    100 (Individual)
Disease
esophageal squamous cell carcinoma (C159)
Sample description
RNAs extracted from tumor tissues from esophageal squamous cell carcinoma patients
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
Heat treatment
Platform
Illumina HiSeq 2000
Illumina HiSeq 2500
Read type
Paired-end
Read length
127 bp
Data use policy
NBDC data sharing policy (JGAP000001)