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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000653

Type of data
NGS (Target Capture, RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
970 GB
File formats
  • FASTQ
  • BAM
Research
hum0094
Date published
2022-11-29
Date modified
2026-09-26
DDBJ Search
JGAD000653 (opens in a new tab)
JGA Study
JGAS000534 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
Salivary duct carcinoma (ICD10: C089): 67 cases [fresh-frozen tissue samples: 19, FFPE samples: 48]
  • Health status
    Affected
  • Subject count
    67 (Individual)
Disease
Salivary duct carcinoma (C089)
Sample description
RNAs extracted from tumor tissues
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
NEBNext Ultra Directional RNA Library Prep Kit for Illumina
TruSeq RNA Exome
Fragmentation
Heat treatment
Platform
Illumina HiSeq 2000
Illumina HiSeq 2500
Read type
Paired-end
Read length
Salivary duct carcinoma: 132 bp
133 bp
Data use policy
NBDC data sharing policy (JGAP000001)
No use by private-sector companies (JGAP000003)

Targeted DNA sequencing

Materials and participants
Salivary duct carcinoma (ICD10: C089): 67 cases [67 samples] (fresh-frozen tissue samples: 19, FFPE samples: 48, normal tissue surrounding tumors: 66 samples)
  • Health status
    Affected
  • Subject count
    67 (Individual)
Disease
Salivary duct carcinoma (C089)
Sample description
DNAs extracted from tumor tissues and paired non-tumor tissues (FFPE)
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Targeted DNA sequencing
Target
Todai OncoPanel
http://todaioncopanel.umin.jp/
Reagent kit
SureSelect Custom
Fragmentation
Heat treatment
Platform
Illumina HiSeq 2500
Read type
Paired-end
Read length
Salivary duct carcinoma: 128 bp
132 bp
133 bp
145 bp
Reference genome
GRCh38
Data use policy
NBDC data sharing policy (JGAP000001)