Dataset ID
JGAD000465
- Type of data
- NGS (Amplicon-seq)
- Access criteria
- Controlled-access (Type I)
- Total data volume
- 312 GB
- File formats
- FASTQ
- Research
- hum0295
- Date published
- 2024-11-05
- Date modified
- 2024-11-05
- DDBJ Search
- JGAD000465 (opens in a new tab)
- JGA Study
- JGAS000351 (opens in a new tab)
Unrestricted-access files linked to this dataset
| File | Label | Size | Copy URL |
|---|---|---|---|
| MM_ | 95 genes | 16.2 KB |
Analysis method
RNA Amplicon-seq
- Materials and participants
- melanoma (ICD10: C21.0, C30.0, C31.9, C43.1, C43.3, C43.4, C43.5, C43.6, C43.7, C51.1, C52, C53.9, C60.9, C67.9, C69.0): 98 cases
tumor tissues: 121 samples (one primary tumor sample: 65 cases, two primary tumor samples: 2 cases, metastatic lesion only: 10 cases, both primary and metastatic samples: 21 cases)
non-tumor tissues: 98 samples (blood or saliva)
sebaceous nevus (ICD10: D23.7): 1 case
tumor tissues: 3 samples (sebaceous nevus, trichoblastoma and poroma) - Health statusAffected
- Subject count99 (Individual)
- Disease
- melanoma
- sebaceous nevus
- Sample description
- DNAs extracted from tumor tissues and non-tumor tissues
- TissuePeripheral blood, Saliva
- Tumor / normalMixed
- Sample provider
- N/A
- Experimental method
- Amplicon-seq
- Target
- 95 genes
- Reagent kit
- Ion AmpliSeq Library Kit Plus
- Fragmentation
- PCR
- Platform
- Thermo Fisher Scientific Ion S5
- Read type
- Single-end
- Read length
- 200 bp
- Data use policy
- NBDC data sharing policy (JGAP000001)