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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000428

Type of data
NGS (RNA-seq)
NGS (Exome)
Methylation array
Access criteria
Controlled-access (Type I)
Total data volume
29.3 GB
File formats
  • BAM
  • BPM
Research
hum0289
Date published
2021-07-31
Date modified
2021-07-31
DDBJ Search
JGAD000428 (opens in a new tab)
JGA Study
JGAS000317 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
chronic myelomonocytic leukemia (CMML) (ICD10: C93.1): 1 case (2 samples)
peripheral blood samples collected at HCT and relapse
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
chronic myelomonocytic leukemia (CMML) (C931)
Sample description
RNAs extracted from CD14+/CD16- monocytes isolated from peripheral blood samples
  • Tissue
    Peripheral blood
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
SMART-Seq Stranded Kit
Fragmentation
SMART-seq Stranded kit
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
Genedata Profiler Genome 13.0.11
STAR 2.6.0c
QC and filtering
NovaSeq Control Software v1.6.0
Real Time Analysis (RTA) v3.4.4
bcl2fastq2 v2.20
Coverage (breadth)
76.3–84.1%
Data use policy
NBDC data sharing policy (JGAP000001)

WES

Materials and participants
chronic myelomonocytic leukemia (CMML) (ICD10: C93.1): 1 case (2 samples)
peripheral blood samples collected at HCT and relapse
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
chronic myelomonocytic leukemia (CMML) (C931)
Sample description
DNAs extracted from CD14+/CD16- monocytes isolated from peripheral blood samples
  • Tissue
    Peripheral blood
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
WES
Target
N/A
Reagent kit
SureSelect Human All Exon V6
SureSelect XT Reagent Kit
Fragmentation
Ultrasonic fragmentation (Covaris)
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh37
Mapping
DRAGEN Bio-IT Platform 3.5.7
SnpEff v4.2
VCFtools 0.1.9
QC and filtering
NovaSeq Control Software v1.6.0
Real Time Analysis (RTA) v3.4.4
bcl2fastq2 v2.20
Coverage (breadth)
99% (More than)
Data use policy
NBDC data sharing policy (JGAP000001)

メチル化アレイ

Materials and participants
chronic myelomonocytic leukemia (CMML) (ICD10: C93.1): 1 case (2 samples)
peripheral blood samples collected at HCT and relapse
  • Health status
    Affected
  • Subject count
    1 (Individual)
Disease
chronic myelomonocytic leukemia (CMML) (C931)
Sample description
DNAs extracted from CD14+/CD16- monocytes isolated from peripheral blood samples
  • Tissue
    Peripheral blood
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
Methylation array
Target
N/A
Reagent kit
Infinium MethylationEPIC BeadChip Kit
Platform
Illumina Infinium MethylationEPIC
QC and filtering
GenomeStudio Software V2011.1
Methylation Module 1.9.0
Normalization
GenomeStudio Software V2011.1
Methylation Module 1.9.0
Analysis method
iScan System 309171 Rev B
iScan Control Software 3.4.8
Probe count
850,000 probes (Infinium MethylationEPIC BeadChip)
Data use policy
NBDC data sharing policy (JGAP000001)