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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000425

Type of data
NGS (WGS + Target Capture, Target Capture)
Access criteria
Controlled-access (Type I)
Total data volume
1.1 MB
File formats
  • VCF
  • TXT
Research
hum0114
Date published
2021-08-10
Date modified
2021-08-10
DDBJ Search
JGAD000425 (opens in a new tab)
JGA Study
JGAS000314 (opens in a new tab)

Analysis method

WGS + Targeted DNA sequencing

Materials and participants
Cell lines of the Japanese population: 1,173 samples
  • Subject count
    1173 (Sample)
  • Population
    Japanese
Sample description
DNA extracted from cell lines of Japanese population
Sample provider
http://www.jbic.or.jp/enterprise/developer/013.html
Experimental method
Targeted DNA sequencing
Target
KIR gene
Reagent kit
KAPA HyperPlus Kit
SeqCap EZ Choice
Fragmentation
Enzymatic fragmentation
Platform
Illumina MiSeq
Read type
Paired-end
Read length
WGS: 151 bp
Target Capture: 350 bp
Target Capture: 250 bp
Reference genome
GRCh37
Mapping
bwa
Variant count
1959
Data use policy
NBDC data sharing policy (JGAP000001)

WGS + Targeted DNA sequencing

Materials and participants
Cell lines of the Japanese population: 689 samples
  • Subject count
    689 (Sample)
  • Population
    Japanese
Sample description
DNA extracted from cell lines of Japanese population
Sample provider
http://www.jbic.or.jp/enterprise/developer/013.html
Experimental method
Targeted DNA sequencing
WGS
Target
KIR gene
Reagent kit
KAPA HyperPlus Kit
SeqCap EZ Choice
Fragmentation
WGS: Ultrasonic fragmentation
Target Capture: Enzymatic fragmentation
Platform
Illumina HiSeq X
Illumina MiSeq
Illumina NovaSeq
Read type
Paired-end
Read length
350 bp
250 bp
Reference genome
GRCh37
Mapping
bwa
Coverage (depth)
140.6x
Variant count
118
Data use policy
NBDC data sharing policy (JGAP000001)