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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000422

Type of data
NGS (Visium Spatial Gene Expression), Histological image
Access criteria
Controlled-access (Type I)
Total data volume
132 GB
File formats
  • FASTQ
  • TSV
  • TIFF
Research
hum0286
Date published
2022-09-13
Date modified
2022-09-13
DDBJ Search
JGAD000422 (opens in a new tab)
JGA Study
JGAS000311 (opens in a new tab)

Analysis method

Visium 空間トランスクリプトーム + 病理画像

Materials and participants
hepatocellular carcinoma (ICD10: C220): 3 cases
fat-containing HCC: 2 sample
non-tumor tissue of fat-containing HCC: 1 sample
fat-not containing HCC: 1 sample
  • Health status
    Affected
  • Subject count
    3 (Individual)
Disease
hepatocellular carcinoma (C220)
Sample description
RNAs extracted from sample tissues
  • Tissue
    Liver
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
Histological image
Spatial transcriptomics
Target
N/A
Reagent kit
Visium Spatial Gene Expression
Fragmentation
enzymatic fragmentation
Platform
Illumina NovaSeq 6000
Read type
Paired-end
Read length
118 bp
Data use policy
NBDC data sharing policy (JGAP000001)