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Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000256

Type of data
NGS (Exome)
Access criteria
Controlled-access (Type I)
Total data volume
1.0 TB
File formats
  • FASTQ
  • VCF
  • BEDPE
Research
hum0053
Date published
2020-09-28
Date modified
2020-11-18
DDBJ Search
JGAD000256 (opens in a new tab)
JGA Study
JGAS000176 (opens in a new tab)

Analysis method

WGS

Materials and participants
12 Malignant pleural mesothelioma patients
(12 tumor tissues)
  • Health status
    Affected
  • Subject count
    12 (Individual)
Sample description
Genomic DNAs extracted from established mesothelioma cell lines from malignant pleural mesothelioma patients
  • Tumor / normal
    Tumor
Sample provider
N/A
Experimental method
WGS
Target
N/A
Reagent kit
Chromium Genome Library v2
Fragmentation
Chromium Genome Library & Gel Bead Kit v2
Platform
10x Genomics Chromium
Read type
Paired-end
Read length
150 bp
Reference genome
GRCh38
Mapping
Long Ranger Pipeline
QC and filtering
default of 10x genomics SV-calling algorithms
Analysis method
Long Ranger Pipeline
Coverage (depth)
46x
Variant count
2399
Data use policy
NBDC data sharing policy (JGAP000001)