Skip to content
NBDC Human Database

No datasets in the cart.

Go to the cart

Due to system maintenance, the application system, application review by the Data Access Committee will be unavailable during the following period.
Schedule: October 5th (Mon), 2026, 9:00 - October 7th (Wed), 2026, 15:00 (JST)
We apologize for any inconvenience this may cause and appreciate your understanding.

We are currently receiving a large number of applications for data submission, and the review process is taking longer than usual.We sincerely apologize for the delay and kindly ask for your understanding. When submitting an application, we would greatly appreciate it if you could allow sufficient time for the processing.

Following a change to our organizational structure effective April 1, 2026, this division has been renamed from the "Database Center for Life Science, Joint Support-Center for Data Science Research" to the "Database Division for Life Science (DBCLS), BioData Science Initiative (BSI), National Institute of Genetics (NIG)". Where the former name still appears in the guidelines, please read it as the new name.

Dataset ID

JGAD000229

Type of data
NGS (WGS)
NGS (RNA-seq)
Access criteria
Controlled-access (Type I)
Total data volume
2.8 TB
File formats
  • FASTQ
Research
hum0158
Date published
2020-09-28
Date modified
2021-05-25
DDBJ Search
JGAD000229 (opens in a new tab)
JGA Study
JGAS000151 (opens in a new tab)

Analysis method

RNA-seq

Materials and participants
liver cancer (ICD10: C220, 221, 227): 238 cases
cancer tissues: 238 samples
paired non-cancer tissues: 201 samples
  • Health status
    Affected
  • Subject count
    238 (Individual)
Disease
hepatocellular carcinoma (C220)
intrahepatic cholangiocarcinoma (C221)
combined hepatocellular-cholangiocarcinoma (C227)
Sample description
RNAs extracted from cancer tissues and paired non-cancer tissues from liver cancer patients
  • Tumor / normal
    Mixed
Sample provider
N/A
Experimental method
RNA-seq
Target
N/A
Reagent kit
TruSeq RNA Library Prep Kit
TruSeq Stranded mRNA Library Prep Kit
Fragmentation
Heat treatment
Platform
Illumina Genome Analyzer IIx
Illumina HiSeq 2000
Read type
Paired-end
Read length
100 bp
Data use policy
NBDC data sharing policy (JGAP000001)